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Quarantine Tanks: How to Protect Your Pond from New Fish

By koisensei, 28 October, 2025
10/28/2025 - 07:00

So, you’ve found the perfect new koi—maybe a fiery Showa with ink-black markings, or a brilliant Kohaku glowing red and white like a swimming flag. You’re excited to introduce your new prize to the pond, imagining it gliding gracefully among your other living jewels. But hold up—before you let that newcomer dive in, there’s one essential rule every koi keeper must follow: quarantine first, celebrate later.

Think of your quarantine tank as a customs checkpoint for koi. It’s not glamorous, but it’s the single best defense against disease, parasites, and heartbreak. Let’s break down what a quarantine tank is, why you need one, and how to use it like a seasoned koi keeper.

1. Why Quarantine Matters (Even if the Fish Looks Perfect)

Your new koi might look flawless—bright colors, lively swimming, perfect fins—but that doesn’t mean it’s clean beneath the surface. Koi can carry parasites, bacteria, or viruses without showing any symptoms for weeks. If you drop that fish directly into your pond, you’re not just adding beauty—you could be unleashing chaos.

Common uninvited guests include:

  • Ich (white spot disease): Tiny parasites that turn koi into itchy, unhappy polka dots.
  • Flukes: Microscopic freeloaders that damage gills and skin.
  • Costia, Trichodina, Chilodonella: (Try saying those three times fast.) These protozoans can cause slime coat loss and ulcers.
  • Bacterial infections: Open sores, fin rot, or ulcers that can spread like wildfire.

In short: a single sick koi can infect your entire pond. Quarantine is your koi’s “trial period”—a safe space to observe, treat, and ensure they’re healthy before they meet the rest of your fishy family.

2. Setting Up Your Quarantine Tank

You don’t need a high-tech laboratory—just a clean, functional setup that mimics your pond’s water quality. Here’s what you’ll need:

  • Tank size: Around 200–500 gallons for a few koi. Plastic tubs or small preformed ponds work great.
  • Filtration: A reliable biofilter and mechanical filter to keep ammonia and nitrites at zero.
  • Aeration: Add an air pump or stone—oxygen keeps your koi calm and healthy.
  • Heater (optional): Maintaining 74–78°F (23–25°C) speeds up parasite cycles and helps detect problems sooner.
  • Cover or net: Koi in new environments are Olympic-level jumpers. Save yourself the heartbreak.
  • Test kit: You’ll need to monitor ammonia, nitrite, nitrate, pH, and KH regularly.

Pro tip: Never use old pond water in your quarantine tank—it might already contain pathogens. Start fresh with dechlorinated water and let the biofilter mature before adding fish.

3. Acclimating the New Arrival

When your koi arrives, it’s been through quite the journey—bagged, boxed, and sloshed around like a fancy sushi ingredient. So go easy on it. Here’s how to make the transition smooth:

  1. Float the bag: Let it rest on the quarantine tank surface for 15–20 minutes to equalize temperature.
  2. Add tank water slowly: Mix a cup of quarantine water into the bag every 5 minutes for half an hour. This helps the koi adjust to your pH and hardness.
  3. Gently release: Use a net to move the fish—never pour transport water into your tank.

Your koi will be stressed for the first few hours. Keep the environment calm and well-aerated—no loud noises, sudden movements, or feeding just yet. Think of it as a “fish spa day.”

4. The Quarantine Process: 3 to 4 Weeks of Observation

Now comes the waiting game. You’ll want to keep the koi in quarantine for at least 3–4 weeks—some keepers go up to six. During this time, you’re watching for changes in behavior, appetite, or appearance.

Here’s your checklist:

  • ✅ Eating well and swimming normally.
  • ✅ No flashing (rubbing against the tank sides).
  • ✅ Clear eyes, no mucus buildup, no frayed fins.
  • ✅ Stable water parameters (ammonia and nitrite at 0, nitrate below 40 ppm).

If anything seems off—flashing, sitting at the bottom, gasping at the surface—it’s time for closer inspection or treatment. Many koi keepers also use preventive parasite treatments during quarantine, such as salt baths or medicated dips (but always follow dosage instructions carefully).

5. Feeding During Quarantine

Go easy on the food at first. Koi fresh from travel often need 24 hours to settle before eating. Start with small portions of high-quality, easily digestible food—like wheat germ pellets or spirulina-based diets. Keep feeding light until water tests show your filter is handling the load well.

Remember, uneaten food = ammonia = stress = sick koi. Less is more, especially in a smaller quarantine system.

6. Introducing the Koi to the Main Pond

After your new koi passes the quarantine period with flying fins, it’s time for the big move! But don’t rush—proper acclimation to your pond is key.

  1. Test your pond and quarantine water. pH and temperature should be within 1 degree and 0.2 pH units of each other.
  2. Float the koi in a bag or container at the pond surface for 15–30 minutes.
  3. Slowly mix pond water into the container over 20 minutes.
  4. Release the koi gently into the pond (no transport water, ever!).

Watch closely for the first few hours. The new fish might explore nervously or stick to one area—but soon, it’ll join the others, becoming part of the pond’s shimmering chorus.

7. Bonus: Quarantine Tips for Pros

  • Keep a few “sacrificial” or test koi (healthy residents you know well) in your quarantine tank to help assess if the new fish introduces anything contagious. If they stay healthy, your main pond likely will too.
  • Label your equipment: Use separate nets, hoses, and buckets for quarantine. Cross-contamination is a silent killer.
  • Observe quietly: The less stress your koi experiences, the faster it adjusts and reveals any hidden issues.

Pro tip: Keep your quarantine tank running year-round if you frequently add new koi. It saves setup time and keeps beneficial bacteria ready for action.

Quarantine tanks aren’t just a precaution—they’re a promise. A promise that every koi entering your pond will be healthy, strong, and disease-free. They may not be as glamorous as waterfalls or lotus flowers, but they’re the unsung heroes of koi keeping.

Quarantine every new fish, even if it looks perfect. Think of it as pond insurance—and peace of mind. Because when your koi glide through crystal-clear water, you’ll know they’re not just beautiful—they’re safe, too.

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